J4_7LS1_009

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUGG

Length

22 nucleotides

Bulged bases

7LS1|1|A2|U|3474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|3352
7LS1|1|A2|U|3353
7LS1|1|A2|G|3354
*
7LS1|1|A2|C|3408
7LS1|1|A2|G|3409
*
7LS1|1|A2|C|3427
7LS1|1|A2|U|3428
7LS1|1|A2|U|3429
7LS1|1|A2|A|3430
7LS1|1|A2|A|3431
7LS1|1|A2|G|3432
7LS1|1|A2|G|3433
7LS1|1|A2|U|3434
7LS1|1|A2|A|3435
7LS1|1|A2|G|3436
*
7LS1|1|A2|U|3470
7LS1|1|A2|G|3471
7LS1|1|A2|A|3472
7LS1|1|A2|A|3473
7LS1|1|A2|U|3474
7LS1|1|A2|G|3475
7LS1|1|A2|G|3476

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA