J4_7LS1_011

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAA*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

7LS1|1|A2|A|4241, 7LS1|1|A2|U|4329

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|G|4239
7LS1|1|A2|U|4240
7LS1|1|A2|A|4241
7LS1|1|A2|A|4242
*
7LS1|1|A2|OMU|4272
7LS1|1|A2|C|4273
*
7LS1|1|A2|G|4328
7LS1|1|A2|U|4329
7LS1|1|A2|G|4330
*
7LS1|1|A2|C|4364
7LS1|1|A2|G|4365
7LS1|1|A2|C|4366
7LS1|1|A2|C|4367

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain I2

60S ribosomal protein L13a

Chain P2

60S ribosomal protein L23