J4_7LS1_015

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCGG*CGGUCAC*GAAGCCG

Length

22 nucleotides

Bulged bases

7LS1|1|A2|U|882, 7LS1|1|A2|G|1063, 7LS1|1|A2|C|1085, 7LS1|1|A2|C|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|881
7LS1|1|A2|U|882
7LS1|1|A2|C|883
*
7LS1|1|A2|G|925
7LS1|1|A2|C|926
7LS1|1|A2|C|927
7LS1|1|A2|G|928
7LS1|1|A2|G|929
*
7LS1|1|A2|C|1062
7LS1|1|A2|G|1063
7LS1|1|A2|G|1064
7LS1|1|A2|U|1065
7LS1|1|A2|C|1066
7LS1|1|A2|A|1067
7LS1|1|A2|C|1068
*
7LS1|1|A2|G|1081
7LS1|1|A2|A|1082
7LS1|1|A2|A|1083
7LS1|1|A2|G|1084
7LS1|1|A2|C|1085
7LS1|1|A2|C|1086
7LS1|1|A2|G|1087

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6

Chain V2

60S ribosomal protein L29