J4_7LS1_017
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUUU*AUGA(A2M)C
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7LS1_017 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.3263
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7LS1|1|A2|G|3290
7LS1|1|A2|A|3291
7LS1|1|A2|C|3292
7LS1|1|A2|U|3293
7LS1|1|A2|G|3294
*
7LS1|1|A2|C|3306
7LS1|1|A2|A|3307
7LS1|1|A2|A|3308
7LS1|1|A2|A|3309
7LS1|1|A2|G|3310
*
7LS1|1|A2|U|3346
7LS1|1|A2|G|3347
7LS1|1|A2|A|3348
7LS1|1|A2|U|3349
7LS1|1|A2|U|3350
7LS1|1|A2|U|3351
*
7LS1|1|A2|A|3477
7LS1|1|A2|U|3478
7LS1|1|A2|G|3479
7LS1|1|A2|A|3480
7LS1|1|A2|A2M|3481
7LS1|1|A2|C|3482
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- 60S ribosomal protein L8
- Chain h2
- 60S ribosomal protein L41
- Chain j2
- 60S ribosomal protein L37a
- Chain m2
- Small subunit ribosomal RNA; SSU rRNA
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