J4_7LV0_013

3D structure

PDB id

7LV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

7LV0|1|3|C|576, 7LV0|1|3|A|815, 7LV0|1|3|G|818, 7LV0|1|3|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LV0_013 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0965

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

7LV0|1|3|G|575
7LV0|1|3|C|576
7LV0|1|3|G|577
*
7LV0|1|3|C|764
7LV0|1|3|G|765
7LV0|1|3|A|766
7LV0|1|3|A|767
7LV0|1|3|A|768
7LV0|1|3|G|769
*
7LV0|1|3|C|810
7LV0|1|3|C|811
7LV0|1|3|G|812
7LV0|1|3|U|813
7LV0|1|3|A|814
7LV0|1|3|A|815
7LV0|1|3|A|816
7LV0|1|3|C|817
7LV0|1|3|G|818
7LV0|1|3|A|819
7LV0|1|3|U|820
7LV0|1|3|G|821
*
7LV0|1|3|C|879
7LV0|1|3|C|880

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain M

30S ribosomal protein S8

Chain Q

30S ribosomal protein S12

Chain T

30S ribosomal protein S15

Chain V

30S ribosomal protein S17

Chain Z

30S ribosomal protein S21