J4_7LVK_002

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LVK_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0547

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7LVK|1|I|G|297
7LVK|1|I|G|298
7LVK|1|I|A|299
7LVK|1|I|A|300
7LVK|1|I|G|301
*
7LVK|1|I|C|316
7LVK|1|I|G|317
7LVK|1|I|C|318
7LVK|1|I|G|319
*
7LVK|1|I|C|323
7LVK|1|I|A|324
7LVK|1|I|G|325
*
7LVK|1|I|C|337
7LVK|1|I|G|338
7LVK|1|I|U|339
7LVK|1|I|A|340
7LVK|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24