J4_7LVK_009

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7LVK|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LVK_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0919

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7LVK|1|I|C|1833
7LVK|1|I|U|1834
7LVK|1|I|2MG|1835
*
7LVK|1|I|C|1905
7LVK|1|I|G|1906
*
7LVK|1|I|C|1924
7LVK|1|I|C|1925
7LVK|1|I|U|1926
7LVK|1|I|A|1927
7LVK|1|I|A|1928
7LVK|1|I|G|1929
7LVK|1|I|G|1930
7LVK|1|I|U|1931
7LVK|1|I|A|1932
7LVK|1|I|G|1933
*
7LVK|1|I|C|1967
7LVK|1|I|G|1968
7LVK|1|I|A|1969
7LVK|1|I|A|1970
7LVK|1|I|U|1971
7LVK|1|I|G|1972

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2