J4_7M4W_009

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7M4W|1|A|U|1967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4W_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1753

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7M4W|1|A|C|1829
7M4W|1|A|U|1830
7M4W|1|A|G|1831
*
7M4W|1|A|C|1901
7M4W|1|A|G|1902
*
7M4W|1|A|C|1920
7M4W|1|A|C|1921
7M4W|1|A|U|1922
7M4W|1|A|A|1923
7M4W|1|A|A|1924
7M4W|1|A|G|1925
7M4W|1|A|G|1926
7M4W|1|A|U|1927
7M4W|1|A|A|1928
7M4W|1|A|G|1929
*
7M4W|1|A|C|1963
7M4W|1|A|G|1964
7M4W|1|A|A|1965
7M4W|1|A|A|1966
7M4W|1|A|U|1967
7M4W|1|A|G|1968

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA