J4_7M4X_003

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

7M4X|1|A|U|651, 7M4X|1|A|U|652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4X_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4411

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7M4X|1|A|C|599
7M4X|1|A|G|600
7M4X|1|A|A|601
7M4X|1|A|G|602
*
7M4X|1|A|C|622
7M4X|1|A|G|623
7M4X|1|A|U|624
7M4X|1|A|A|625
7M4X|1|A|G|626
*
7M4X|1|A|C|633
7M4X|1|A|G|634
7M4X|1|A|A|635
7M4X|1|A|G|636
*
7M4X|1|A|C|648
7M4X|1|A|G|649
7M4X|1|A|U|650
7M4X|1|A|U|651
7M4X|1|A|U|652
7M4X|1|A|A|653
7M4X|1|A|G|654

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15