J4_7M5D_005

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7M5D|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M5D_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0928

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7M5D|1|1|G|1310
7M5D|1|1|G|1311
7M5D|1|1|U|1312
7M5D|1|1|U|1313
7M5D|1|1|C|1314
*
7M5D|1|1|G|1338
7M5D|1|1|G|1339
7M5D|1|1|U|1340
7M5D|1|1|G|1341
7M5D|1|1|A|1342
7M5D|1|1|G|1343
*
7M5D|1|1|C|1404
7M5D|1|1|U|1405
*
7M5D|1|1|A|1597
7M5D|1|1|A|1598
7M5D|1|1|U|1599
7M5D|1|1|C|1600
7M5D|1|1|G|1601
7M5D|1|1|U|1602
7M5D|1|1|A|1603
7M5D|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34