3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
7M5D|1|1|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7M5D_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0928
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7M5D|1|1|G|1310
7M5D|1|1|G|1311
7M5D|1|1|U|1312
7M5D|1|1|U|1313
7M5D|1|1|C|1314
*
7M5D|1|1|G|1338
7M5D|1|1|G|1339
7M5D|1|1|U|1340
7M5D|1|1|G|1341
7M5D|1|1|A|1342
7M5D|1|1|G|1343
*
7M5D|1|1|C|1404
7M5D|1|1|U|1405
*
7M5D|1|1|A|1597
7M5D|1|1|A|1598
7M5D|1|1|U|1599
7M5D|1|1|C|1600
7M5D|1|1|G|1601
7M5D|1|1|U|1602
7M5D|1|1|A|1603
7M5D|1|1|C|1604

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L23
Chain d
50S ribosomal protein L34

Coloring options:


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