J4_7MPJ_007
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(PSU)G
- Length
- 21 nucleotides
- Bulged bases
- 7MPJ|1|A1|PSU|2314
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MPJ_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1477
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|A1|C|2192
7MPJ|1|A1|U|2193
7MPJ|1|A1|G|2194
*
7MPJ|1|A1|C|2248
7MPJ|1|A1|G|2249
*
7MPJ|1|A1|C|2267
7MPJ|1|A1|U|2268
7MPJ|1|A1|U|2269
7MPJ|1|A1|A|2270
7MPJ|1|A1|A|2271
7MPJ|1|A1|G|2272
7MPJ|1|A1|G|2273
7MPJ|1|A1|U|2274
7MPJ|1|A1|A|2275
7MPJ|1|A1|G|2276
*
7MPJ|1|A1|U|2310
7MPJ|1|A1|G|2311
7MPJ|1|A1|A|2312
7MPJ|1|A1|A|2313
7MPJ|1|A1|PSU|2314
7MPJ|1|A1|G|2315
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: