3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
C(A2M)UUAAA(PSU)C*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
7MPJ|1|B5|A|359
QA status
Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7MPJ_010 not in the Motif Atlas
Homologous match to J4_8C3A_021
Geometric discrepancy: 0.132
The information below is about J4_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78231.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

7MPJ|1|B5|C|99
7MPJ|1|B5|A2M|100
7MPJ|1|B5|U|101
7MPJ|1|B5|U|102
7MPJ|1|B5|A|103
7MPJ|1|B5|A|104
7MPJ|1|B5|A|105
7MPJ|1|B5|PSU|106
7MPJ|1|B5|C|107
*
7MPJ|1|B5|G|307
7MPJ|1|B5|C|308
7MPJ|1|B5|C|309
*
7MPJ|1|B5|G|357
7MPJ|1|B5|U|358
7MPJ|1|B5|A|359
7MPJ|1|B5|A|360
7MPJ|1|B5|C|361
*
7MPJ|1|B5|G|383
7MPJ|1|B5|G|384

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BI
40S ribosomal protein S8-A
Chain BL
40S ribosomal protein S11-A
Chain BX
40S ribosomal protein S23-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1426 s