J4_7MQA_003
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUG*CUUG*(OMC)G(OMU)U*A(PSU)(OMG)
- Length
- 14 nucleotides
- Bulged bases
- 7MQA|1|L1|U|689, 7MQA|1|L1|U|743
- QA status
- Modified nucleotides: OMC, OMU, PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MQA|1|L1|U|688
7MQA|1|L1|U|689
7MQA|1|L1|G|690
*
7MQA|1|L1|C|741
7MQA|1|L1|U|742
7MQA|1|L1|U|743
7MQA|1|L1|G|744
*
7MQA|1|L1|OMC|797
7MQA|1|L1|G|798
7MQA|1|L1|OMU|799
7MQA|1|L1|U|800
*
7MQA|1|L1|A|865
7MQA|1|L1|PSU|866
7MQA|1|L1|OMG|867
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L7
- 40S ribosomal protein S7
- Chain LD
- 40S ribosomal protein S11
- Chain NF
- 40S ribosomal protein S13
- Chain NO
- 40S ribosomal protein S15a
- Chain SP
- Small subunit processome component 20 homolog
- Chain SR
- 40S ribosomal protein S23
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