J4_7MSZ_013
3D structure
- PDB id
- 7MSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mtb 70SIC in complex with MtbEttA at Trans_R1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 7MSZ|1|y|U|8, 7MSZ|1|y|U|48, 7MSZ|1|y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MSZ_013 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.2733
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7MSZ|1|y|G|7
7MSZ|1|y|U|8
7MSZ|1|y|G|9
7MSZ|1|y|G|10
*
7MSZ|1|y|C|26
7MSZ|1|y|G|27
7MSZ|1|y|U|28
7MSZ|1|y|C|29
*
7MSZ|1|y|G|43
7MSZ|1|y|A|44
7MSZ|1|y|A|45
7MSZ|1|y|G|46
7MSZ|1|y|G|47
7MSZ|1|y|U|48
7MSZ|1|y|C|49
7MSZ|1|y|G|50
*
7MSZ|1|y|C|66
7MSZ|1|y|C|67
Current chains
- Chain y
- initiator tRNA (Met)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
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