3D structure

PDB id
7MT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mtb 70S with P/E tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAG*CGAAAG*CCGUAAACGGUG*CC
Length
23 nucleotides
Bulged bases
7MT3|1|a|A|567, 7MT3|1|a|A|806
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7MT3_012 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0738
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7MT3|1|a|G|566
7MT3|1|a|A|567
7MT3|1|a|G|568
*
7MT3|1|a|C|755
7MT3|1|a|G|756
7MT3|1|a|A|757
7MT3|1|a|A|758
7MT3|1|a|A|759
7MT3|1|a|G|760
*
7MT3|1|a|C|801
7MT3|1|a|C|802
7MT3|1|a|G|803
7MT3|1|a|U|804
7MT3|1|a|A|805
7MT3|1|a|A|806
7MT3|1|a|A|807
7MT3|1|a|C|808
7MT3|1|a|G|809
7MT3|1|a|G|810
7MT3|1|a|U|811
7MT3|1|a|G|812
*
7MT3|1|a|C|872
7MT3|1|a|C|873

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1531 s