J4_7N1P_005

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0471

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7N1P|1|23|G|297
7N1P|1|23|G|298
7N1P|1|23|A|299
7N1P|1|23|A|300
7N1P|1|23|G|301
*
7N1P|1|23|C|316
7N1P|1|23|G|317
7N1P|1|23|C|318
7N1P|1|23|G|319
*
7N1P|1|23|C|323
7N1P|1|23|A|324
7N1P|1|23|G|325
*
7N1P|1|23|C|337
7N1P|1|23|G|338
7N1P|1|23|U|339
7N1P|1|23|A|340
7N1P|1|23|C|341

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LX

50S ribosomal protein L24