J4_7N1P_006

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.207

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7N1P|1|23|C|601
7N1P|1|23|A|602
7N1P|1|23|A|603
7N1P|1|23|G|604
*
7N1P|1|23|C|624
7N1P|1|23|G|625
7N1P|1|23|A|626
7N1P|1|23|A|627
7N1P|1|23|G|628
*
7N1P|1|23|C|635
7N1P|1|23|G|636
7N1P|1|23|A|637
7N1P|1|23|G|638
*
7N1P|1|23|C|650
7N1P|1|23|G|651
7N1P|1|23|U|652
7N1P|1|23|U|653
7N1P|1|23|A|654
7N1P|1|23|A|655
7N1P|1|23|G|656

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15

Chain Li

50S ribosomal protein L35