J4_7N1P_012

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7N1P|1|23|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0838

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7N1P|1|23|C|1833
7N1P|1|23|U|1834
7N1P|1|23|2MG|1835
*
7N1P|1|23|C|1905
7N1P|1|23|G|1906
*
7N1P|1|23|C|1924
7N1P|1|23|C|1925
7N1P|1|23|U|1926
7N1P|1|23|A|1927
7N1P|1|23|A|1928
7N1P|1|23|G|1929
7N1P|1|23|G|1930
7N1P|1|23|U|1931
7N1P|1|23|A|1932
7N1P|1|23|G|1933
*
7N1P|1|23|C|1967
7N1P|1|23|G|1968
7N1P|1|23|A|1969
7N1P|1|23|A|1970
7N1P|1|23|U|1971
7N1P|1|23|G|1972

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain Dt

Transfer RNA; tRNA

Chain LB

50S ribosomal protein L2