J4_7N1P_016

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUAG*CAG*UUGG(3AU)CG*CA

Length

16 nucleotides

Bulged bases

7N1P|1|Pt|U|8, 7N1P|1|Pt|3AU|47, 7N1P|1|Pt|C|48

QA status

Modified nucleotides: 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_016 not in the Motif Atlas

Homologous match to J4_7EQJ_002

Geometric discrepancy: 0.1711

The information below is about J4_7EQJ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7N1P|1|Pt|U|7
7N1P|1|Pt|U|8
7N1P|1|Pt|A|9
7N1P|1|Pt|G|10
*
7N1P|1|Pt|C|25
7N1P|1|Pt|A|26
7N1P|1|Pt|G|27
*
7N1P|1|Pt|U|43
7N1P|1|Pt|U|44
7N1P|1|Pt|G|45
7N1P|1|Pt|G|46
7N1P|1|Pt|3AU|47
7N1P|1|Pt|C|48
7N1P|1|Pt|G|49
*
7N1P|1|Pt|C|65
7N1P|1|Pt|A|66

Current chains

Chain Pt

tRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA