J4_7N2V_003
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7N2V|1|16|C|576, 7N2V|1|16|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7N2V_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0559
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7N2V|1|16|G|575
7N2V|1|16|C|576
7N2V|1|16|G|577
*
7N2V|1|16|C|764
7N2V|1|16|G|765
7N2V|1|16|A|766
7N2V|1|16|A|767
7N2V|1|16|A|768
7N2V|1|16|G|769
*
7N2V|1|16|C|810
7N2V|1|16|C|811
7N2V|1|16|G|812
7N2V|1|16|U|813
7N2V|1|16|A|814
7N2V|1|16|A|815
7N2V|1|16|A|816
7N2V|1|16|C|817
7N2V|1|16|G|818
7N2V|1|16|A|819
7N2V|1|16|U|820
7N2V|1|16|G|821
*
7N2V|1|16|C|879
7N2V|1|16|C|880
Current chains
- Chain 16
- 16S rRNA
Nearby chains
- Chain SH
- 30S ribosomal protein S8
- Chain SL
- 30S ribosomal protein S12
- Chain SO
- 30S ribosomal protein S15
- Chain SQ
- 30S ribosomal protein S17
- Chain SU
- 30S ribosomal protein S21
Coloring options: