J4_7N2V_008

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7N2V|1|23|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2V_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0459

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7N2V|1|23|G|1310
7N2V|1|23|G|1311
7N2V|1|23|U|1312
7N2V|1|23|U|1313
7N2V|1|23|C|1314
*
7N2V|1|23|G|1338
7N2V|1|23|G|1339
7N2V|1|23|U|1340
7N2V|1|23|G|1341
7N2V|1|23|A|1342
7N2V|1|23|G|1343
*
7N2V|1|23|C|1404
7N2V|1|23|U|1405
*
7N2V|1|23|A|1597
7N2V|1|23|A|1598
7N2V|1|23|U|1599
7N2V|1|23|C|1600
7N2V|1|23|G|1601
7N2V|1|23|U|1602
7N2V|1|23|A|1603
7N2V|1|23|C|1604

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LW

50S ribosomal protein L23

Chain Lh

50S ribosomal protein L34