J4_7N2V_015
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)(3AU)CC*GU
- Length
- 16 nucleotides
- Bulged bases
- 7N2V|1|Dt|4SU|8, 7N2V|1|Dt|3AU|47, 7N2V|1|Dt|C|48
- QA status
- Modified nucleotides: 4SU, 7MG, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7N2V_015 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.2318
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7N2V|1|Dt|A|7
7N2V|1|Dt|4SU|8
7N2V|1|Dt|A|9
7N2V|1|Dt|G|10
*
7N2V|1|Dt|C|25
7N2V|1|Dt|A|26
7N2V|1|Dt|G|27
*
7N2V|1|Dt|C|43
7N2V|1|Dt|G|44
7N2V|1|Dt|U|45
7N2V|1|Dt|7MG|46
7N2V|1|Dt|3AU|47
7N2V|1|Dt|C|48
7N2V|1|Dt|C|49
*
7N2V|1|Dt|G|65
7N2V|1|Dt|U|66
Current chains
- Chain Dt
- tRNA
Nearby chains
- Chain 16
- Small subunit ribosomal RNA; SSU rRNA
- Chain Lg
- 50S ribosomal protein L33
- Chain SM
- 30S ribosomal protein S13
Coloring options: