J4_7N30_012

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7N30|1|23|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N30_012 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.2444

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7N30|1|23|C|1833
7N30|1|23|U|1834
7N30|1|23|2MG|1835
*
7N30|1|23|C|1905
7N30|1|23|G|1906
*
7N30|1|23|C|1924
7N30|1|23|C|1925
7N30|1|23|U|1926
7N30|1|23|A|1927
7N30|1|23|A|1928
7N30|1|23|G|1929
7N30|1|23|G|1930
7N30|1|23|U|1931
7N30|1|23|A|1932
7N30|1|23|G|1933
*
7N30|1|23|C|1967
7N30|1|23|G|1968
7N30|1|23|A|1969
7N30|1|23|A|1970
7N30|1|23|U|1971
7N30|1|23|G|1972

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2