J4_7N8B_007
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7N8B|1|A1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7N8B_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0885
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7N8B|1|A1|C|2192
7N8B|1|A1|U|2193
7N8B|1|A1|G|2194
*
7N8B|1|A1|C|2248
7N8B|1|A1|G|2249
*
7N8B|1|A1|C|2267
7N8B|1|A1|U|2268
7N8B|1|A1|U|2269
7N8B|1|A1|A|2270
7N8B|1|A1|A|2271
7N8B|1|A1|G|2272
7N8B|1|A1|G|2273
7N8B|1|A1|U|2274
7N8B|1|A1|A|2275
7N8B|1|A1|G|2276
*
7N8B|1|A1|U|2310
7N8B|1|A1|G|2311
7N8B|1|A1|A|2312
7N8B|1|A1|A|2313
7N8B|1|A1|U|2314
7N8B|1|A1|G|2315
Current chains
- Chain A1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: