3D structure

PDB id
7NAV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
7NAV|1|A|C|576, 7NAV|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NAV_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.1119
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7NAV|1|A|G|575
7NAV|1|A|C|576
7NAV|1|A|G|577
*
7NAV|1|A|C|764
7NAV|1|A|G|765
7NAV|1|A|A|766
7NAV|1|A|A|767
7NAV|1|A|A|768
7NAV|1|A|G|769
*
7NAV|1|A|C|810
7NAV|1|A|C|811
7NAV|1|A|G|812
7NAV|1|A|U|813
7NAV|1|A|A|814
7NAV|1|A|A|815
7NAV|1|A|A|816
7NAV|1|A|C|817
7NAV|1|A|G|818
7NAV|1|A|A|819
7NAV|1|A|U|820
7NAV|1|A|G|821
*
7NAV|1|A|C|879
7NAV|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:


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