J4_7NHK_006

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

7NHK|1|A|U|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHK_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0968

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7NHK|1|A|U|1348
7NHK|1|A|C|1349
*
7NHK|1|A|G|1373
7NHK|1|A|G|1374
7NHK|1|A|U|1375
7NHK|1|A|U|1376
7NHK|1|A|A|1377
7NHK|1|A|G|1378
*
7NHK|1|A|C|1439
7NHK|1|A|C|1440
*
7NHK|1|A|G|1639
7NHK|1|A|C|1640
7NHK|1|A|C|1641
7NHK|1|A|C|1642
7NHK|1|A|G|1643
7NHK|1|A|U|1644
7NHK|1|A|A|1645

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23