J4_7NHK_015
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7NHK|1|a|C|602, 7NHK|1|a|A|841, 7NHK|1|a|C|843, 7NHK|1|a|A|845
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHK_015 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0968
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NHK|1|a|G|601
7NHK|1|a|C|602
7NHK|1|a|G|603
*
7NHK|1|a|C|790
7NHK|1|a|G|791
7NHK|1|a|A|792
7NHK|1|a|A|793
7NHK|1|a|A|794
7NHK|1|a|G|795
*
7NHK|1|a|C|836
7NHK|1|a|C|837
7NHK|1|a|G|838
7NHK|1|a|U|839
7NHK|1|a|A|840
7NHK|1|a|A|841
7NHK|1|a|A|842
7NHK|1|a|C|843
7NHK|1|a|G|844
7NHK|1|a|A|845
7NHK|1|a|U|846
7NHK|1|a|G|847
*
7NHK|1|a|C|906
7NHK|1|a|C|907
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
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