J4_7NHL_002

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHL_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0869

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|C|340
7NHL|1|A|G|341
7NHL|1|A|A|342
7NHL|1|A|A|343
7NHL|1|A|U|344
*
7NHL|1|A|A|359
7NHL|1|A|A|360
7NHL|1|A|U|361
7NHL|1|A|C|362
*
7NHL|1|A|G|366
7NHL|1|A|A|367
7NHL|1|A|A|368
*
7NHL|1|A|U|380
7NHL|1|A|G|381
7NHL|1|A|U|382
7NHL|1|A|A|383
7NHL|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24