J4_7NHL_004

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

7NHL|1|A|G|1309, 7NHL|1|A|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHL_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.1151

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7NHL|1|A|C|1308
7NHL|1|A|G|1309
7NHL|1|A|A|1310
7NHL|1|A|A|1311
7NHL|1|A|A|1312
7NHL|1|A|G|1313
*
7NHL|1|A|C|1331
7NHL|1|A|C|1332
*
7NHL|1|A|G|1689
7NHL|1|A|A|1690
7NHL|1|A|G|1691
7NHL|1|A|C|1692
*
7NHL|1|A|G|2036
7NHL|1|A|G|2037

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22