J4_7NHL_009
3D structure
- PDB id
- 7NHL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 7NHL|1|A|A|1998
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHL_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0955
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
7NHL|1|A|C|1860
7NHL|1|A|U|1861
7NHL|1|A|G|1862
*
7NHL|1|A|C|1932
7NHL|1|A|G|1933
*
7NHL|1|A|C|1951
7NHL|1|A|C|1952
7NHL|1|A|U|1953
7NHL|1|A|A|1954
7NHL|1|A|A|1955
7NHL|1|A|G|1956
7NHL|1|A|G|1957
7NHL|1|A|U|1958
7NHL|1|A|A|1959
7NHL|1|A|G|1960
*
7NHL|1|A|C|1994
7NHL|1|A|G|1995
7NHL|1|A|A|1996
7NHL|1|A|A|1997
7NHL|1|A|A|1998
7NHL|1|A|G|1999
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Lincosamide-streptogramin A resistance protein
- Chain D
- Transfer RNA; tRNA
- Chain G
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: