J4_7NHL_012

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

7NHL|1|D|U|8, 7NHL|1|D|U|48, 7NHL|1|D|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHL_012 not in the Motif Atlas

Homologous match to J4_7UQ6_001

Geometric discrepancy: 0.2208

The information below is about J4_7UQ6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

7NHL|1|D|G|7
7NHL|1|D|U|8
7NHL|1|D|G|9
7NHL|1|D|G|10
*
7NHL|1|D|C|26
7NHL|1|D|G|27
7NHL|1|D|U|28
*
7NHL|1|D|A|44
7NHL|1|D|A|45
7NHL|1|D|G|46
7NHL|1|D|G|47
7NHL|1|D|U|48
7NHL|1|D|C|49
7NHL|1|D|G|50
*
7NHL|1|D|C|66
7NHL|1|D|C|67

Current chains

Chain D

P-tRNA fMet

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain n

30S ribosomal protein S13