J4_7NHL_014

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GAUAAUAUUUUG*CAAAAGUGAAAG*CAC

Length

30 nucleotides

Bulged bases

7NHL|1|a|A|182, 7NHL|1|a|U|183, 7NHL|1|a|A|211, 7NHL|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHL|1|a|G|142
7NHL|1|a|A|143
7NHL|1|a|C|144
*
7NHL|1|a|G|178
7NHL|1|a|A|179
7NHL|1|a|U|180
7NHL|1|a|A|181
7NHL|1|a|A|182
7NHL|1|a|U|183
7NHL|1|a|A|184
7NHL|1|a|U|185
7NHL|1|a|U|186
7NHL|1|a|U|187
7NHL|1|a|U|188
7NHL|1|a|G|189
*
7NHL|1|a|C|202
7NHL|1|a|A|203
7NHL|1|a|A|204
7NHL|1|a|A|205
7NHL|1|a|A|206
7NHL|1|a|G|207
7NHL|1|a|U|208
7NHL|1|a|G|209
7NHL|1|a|A|210
7NHL|1|a|A|211
7NHL|1|a|A|212
7NHL|1|a|G|213
*
7NHL|1|a|C|227
7NHL|1|a|A|228
7NHL|1|a|C|229

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20