J4_7NHM_004

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

7NHM|1|A|G|1309, 7NHM|1|A|A|1310, 7NHM|1|A|A|1312, 7NHM|1|A|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHM_004 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.1244

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7NHM|1|A|C|1308
7NHM|1|A|G|1309
7NHM|1|A|A|1310
7NHM|1|A|A|1311
7NHM|1|A|A|1312
7NHM|1|A|G|1313
*
7NHM|1|A|C|1331
7NHM|1|A|C|1332
*
7NHM|1|A|G|1689
7NHM|1|A|A|1690
7NHM|1|A|G|1691
7NHM|1|A|C|1692
*
7NHM|1|A|G|2036
7NHM|1|A|G|2037

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22