J4_7NHM_006

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

7NHM|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHM_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0843

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NHM|1|A|U|1350
7NHM|1|A|C|1351
*
7NHM|1|A|G|1375
7NHM|1|A|G|1376
7NHM|1|A|U|1377
7NHM|1|A|U|1378
7NHM|1|A|A|1379
7NHM|1|A|G|1380
*
7NHM|1|A|C|1441
7NHM|1|A|C|1442
*
7NHM|1|A|G|1641
7NHM|1|A|C|1642
7NHM|1|A|C|1643
7NHM|1|A|C|1644
7NHM|1|A|G|1645
7NHM|1|A|U|1646
7NHM|1|A|A|1647

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23