J4_7NHM_012
3D structure
- PDB id
- 7NHM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGG*CGU*AAGGUCG*CU
- Length
- 16 nucleotides
- Bulged bases
- 7NHM|1|D|U|8, 7NHM|1|D|U|48, 7NHM|1|D|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHM_012 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1693
- The information below is about J4_9DFC_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7NHM|1|D|A|7
7NHM|1|D|U|8
7NHM|1|D|G|9
7NHM|1|D|G|10
*
7NHM|1|D|C|26
7NHM|1|D|G|27
7NHM|1|D|U|28
*
7NHM|1|D|A|44
7NHM|1|D|A|45
7NHM|1|D|G|46
7NHM|1|D|G|47
7NHM|1|D|U|48
7NHM|1|D|C|49
7NHM|1|D|G|50
*
7NHM|1|D|C|66
7NHM|1|D|U|67
Current chains
- Chain D
- tRNA-fMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L27
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: