J4_7NHM_013

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

7NHM|1|a|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHM|1|a|G|114
7NHM|1|a|A|115
7NHM|1|a|G|116
7NHM|1|a|U|117
7NHM|1|a|A|118
7NHM|1|a|A|119
7NHM|1|a|C|120
7NHM|1|a|A|121
7NHM|1|a|C|122
*
7NHM|1|a|G|246
7NHM|1|a|C|247
7NHM|1|a|U|248
*
7NHM|1|a|A|294
7NHM|1|a|U|295
7NHM|1|a|A|296
7NHM|1|a|G|297
*
7NHM|1|a|C|319
7NHM|1|a|C|320

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17