J4_7NHN_002

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*CGCC*GAC*GGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHN_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1098

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7NHN|1|A|U|339
7NHN|1|A|G|340
7NHN|1|A|A|341
7NHN|1|A|A|342
7NHN|1|A|G|343
*
7NHN|1|A|C|359
7NHN|1|A|G|360
7NHN|1|A|C|361
7NHN|1|A|C|362
*
7NHN|1|A|G|366
7NHN|1|A|A|367
7NHN|1|A|C|368
*
7NHN|1|A|G|380
7NHN|1|A|G|381
7NHN|1|A|U|382
7NHN|1|A|A|383
7NHN|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24