J4_7NHN_004
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 7NHN|1|A|G|1316, 7NHN|1|A|A|1317, 7NHN|1|A|A|1319, 7NHN|1|A|G|1696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHN_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1314
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NHN|1|A|C|1315
7NHN|1|A|G|1316
7NHN|1|A|A|1317
7NHN|1|A|A|1318
7NHN|1|A|A|1319
7NHN|1|A|G|1320
*
7NHN|1|A|C|1338
7NHN|1|A|C|1339
*
7NHN|1|A|G|1694
7NHN|1|A|A|1695
7NHN|1|A|G|1696
7NHN|1|A|C|1697
*
7NHN|1|A|G|2042
7NHN|1|A|G|2043
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32-2
- Chain Q
- 50S ribosomal protein L17
- Chain V
- 50S ribosomal protein L22
Coloring options: