J4_7NHN_013

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*AAUGAUA*UUGAAAG*CGC

Length

20 nucleotides

Bulged bases

7NHN|1|a|U|184, 7NHN|1|a|A|213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHN|1|a|G|143
7NHN|1|a|U|144
7NHN|1|a|U|145
*
7NHN|1|a|A|179
7NHN|1|a|A|180
7NHN|1|a|U|181
7NHN|1|a|G|182
7NHN|1|a|A|183
7NHN|1|a|U|184
7NHN|1|a|A|185
*
7NHN|1|a|U|208
7NHN|1|a|U|209
7NHN|1|a|G|210
7NHN|1|a|A|211
7NHN|1|a|A|212
7NHN|1|a|A|213
7NHN|1|a|G|214
*
7NHN|1|a|C|229
7NHN|1|a|G|230
7NHN|1|a|C|231

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20