J4_7NHN_014
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7NHN|1|a|C|586, 7NHN|1|a|A|825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHN_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0811
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NHN|1|a|G|585
7NHN|1|a|C|586
7NHN|1|a|G|587
*
7NHN|1|a|C|774
7NHN|1|a|G|775
7NHN|1|a|A|776
7NHN|1|a|A|777
7NHN|1|a|A|778
7NHN|1|a|G|779
*
7NHN|1|a|C|820
7NHN|1|a|C|821
7NHN|1|a|G|822
7NHN|1|a|U|823
7NHN|1|a|A|824
7NHN|1|a|A|825
7NHN|1|a|A|826
7NHN|1|a|C|827
7NHN|1|a|G|828
7NHN|1|a|A|829
7NHN|1|a|U|830
7NHN|1|a|G|831
*
7NHN|1|a|C|890
7NHN|1|a|C|891
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
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