J4_7NQH_008
3D structure
- PDB id
- 7NQH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7NQH|1|BA|U|966
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NQH_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1608
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
7NQH|1|BA|C|876
7NQH|1|BA|U|877
7NQH|1|BA|G|878
*
7NQH|1|BA|C|901
7NQH|1|BA|C|902
*
7NQH|1|BA|G|919
7NQH|1|BA|C|920
7NQH|1|BA|A|921
7NQH|1|BA|A|922
7NQH|1|BA|A|923
7NQH|1|BA|G|924
7NQH|1|BA|G|925
7NQH|1|BA|U|926
7NQH|1|BA|A|927
7NQH|1|BA|G|928
*
7NQH|1|BA|U|962
7NQH|1|BA|G|963
7NQH|1|BA|A|964
7NQH|1|BA|A|965
7NQH|1|BA|U|966
7NQH|1|BA|G|967
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- tRNAMet
- Chain An
- Aurora kinase A interacting protein 1
- Chain BD
- uL2m
Coloring options: