J4_7NQL_010
3D structure
- PDB id
- 7NQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUAG*CAA*UAGAUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 7NQL|1|BB|U|8, 7NQL|1|BB|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NQL_010 not in the Motif Atlas
- Homologous match to J4_7UQ6_001
- Geometric discrepancy: 0.5246
- The information below is about J4_7UQ6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7NQL|1|BB|G|7
7NQL|1|BB|U|8
7NQL|1|BB|A|9
7NQL|1|BB|G|10
*
7NQL|1|BB|C|26
7NQL|1|BB|A|27
7NQL|1|BB|A|28
*
7NQL|1|BB|U|44
7NQL|1|BB|A|45
7NQL|1|BB|G|46
7NQL|1|BB|A|47
7NQL|1|BB|U|48
7NQL|1|BB|G|49
*
7NQL|1|BB|C|62
7NQL|1|BB|C|63
Current chains
- Chain BB
- CP tRNAPhe
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain BS
- Mitochondrial ribosomal protein L18
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bd
- Mitochondrial ribosomal protein L40
- Chain Bk
- 39S ribosomal protein L48, mitochondrial
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