J4_7NRC_010
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 7NRC|1|S2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRC_010 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1117
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|S2|C|99
7NRC|1|S2|A|100
7NRC|1|S2|U|101
7NRC|1|S2|U|102
7NRC|1|S2|A|103
7NRC|1|S2|A|104
7NRC|1|S2|A|105
7NRC|1|S2|U|106
7NRC|1|S2|C|107
*
7NRC|1|S2|G|307
7NRC|1|S2|C|308
7NRC|1|S2|C|309
*
7NRC|1|S2|G|357
7NRC|1|S2|U|358
7NRC|1|S2|A|359
7NRC|1|S2|A|360
7NRC|1|S2|C|361
*
7NRC|1|S2|G|383
7NRC|1|S2|G|384
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SS
- 40S ribosomal protein S4-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain Sc
- 40S ribosomal protein S23-A
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