J4_7NSI_003

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAG*CGAUAG*CCCUAAACCCAA*UC

Length

23 nucleotides

Bulged bases

7NSI|1|AA|A|297, 7NSI|1|AA|A|455, 7NSI|1|AA|C|458, 7NSI|1|AA|A|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSI_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.192

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

7NSI|1|AA|G|296
7NSI|1|AA|A|297
7NSI|1|AA|G|298
*
7NSI|1|AA|C|404
7NSI|1|AA|G|405
7NSI|1|AA|A|406
7NSI|1|AA|U|407
7NSI|1|AA|A|408
7NSI|1|AA|G|409
*
7NSI|1|AA|C|450
7NSI|1|AA|C|451
7NSI|1|AA|C|452
7NSI|1|AA|U|453
7NSI|1|AA|A|454
7NSI|1|AA|A|455
7NSI|1|AA|A|456
7NSI|1|AA|C|457
7NSI|1|AA|C|458
7NSI|1|AA|C|459
7NSI|1|AA|A|460
7NSI|1|AA|A|461
*
7NSI|1|AA|U|483
7NSI|1|AA|C|484

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitoribosomal protein us12m, mrps12

Chain AO

28S ribosomal protein S15, mitochondrial

Chain AQ

uS17m

Chain AU

28S ribosomal protein S21, mitochondrial

Chain Ac

Interferon alpha-inducible protein 6

Chain Am

Coiled-coil-helix-coiled-coil-helix domain containing 1

Chain An

Aurora kinase A interacting protein 1