J4_7NSI_009
3D structure
- PDB id
- 7NSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUAG*CAA*UAGAUG*CC
- Length
- 15 nucleotides
- Bulged bases
- 7NSI|1|BB|U|8, 7NSI|1|BB|U|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NSI_009 not in the Motif Atlas
- Homologous match to J4_7UQ6_001
- Geometric discrepancy: 0.5304
- The information below is about J4_7UQ6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7NSI|1|BB|G|7
7NSI|1|BB|U|8
7NSI|1|BB|A|9
7NSI|1|BB|G|10
*
7NSI|1|BB|C|26
7NSI|1|BB|A|27
7NSI|1|BB|A|28
*
7NSI|1|BB|U|44
7NSI|1|BB|A|45
7NSI|1|BB|G|46
7NSI|1|BB|A|47
7NSI|1|BB|U|48
7NSI|1|BB|G|49
*
7NSI|1|BB|C|62
7NSI|1|BB|C|63
Current chains
- Chain BB
- CP tRNAPhe
Nearby chains
- Chain B0
- 39S ribosomal protein L27, mitochondrial
- Chain BS
- 39S ribosomal protein L18, mitochondrial isoform 1
- Chain Bb
- 39S ribosomal protein L38, mitochondrial
- Chain Bd
- Mitochondrial ribosomal protein L40
- Chain Bk
- 39S ribosomal protein L48, mitochondrial
Coloring options: