J4_7NSP_005

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7NSP|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSP_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0941

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NSP|1|A|G|1310
7NSP|1|A|G|1311
7NSP|1|A|U|1312
7NSP|1|A|U|1313
7NSP|1|A|C|1314
*
7NSP|1|A|G|1338
7NSP|1|A|G|1339
7NSP|1|A|U|1340
7NSP|1|A|G|1341
7NSP|1|A|A|1342
7NSP|1|A|G|1343
*
7NSP|1|A|C|1404
7NSP|1|A|U|1405
*
7NSP|1|A|A|1597
7NSP|1|A|A|1598
7NSP|1|A|U|1599
7NSP|1|A|C|1600
7NSP|1|A|G|1601
7NSP|1|A|U|1602
7NSP|1|A|A|1603
7NSP|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23