3D structure

PDB id
7NSP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
7NSP|1|A|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NSP_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1097
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

7NSP|1|A|C|1833
7NSP|1|A|U|1834
7NSP|1|A|G|1835
*
7NSP|1|A|C|1905
7NSP|1|A|G|1906
*
7NSP|1|A|C|1924
7NSP|1|A|C|1925
7NSP|1|A|U|1926
7NSP|1|A|A|1927
7NSP|1|A|A|1928
7NSP|1|A|G|1929
7NSP|1|A|G|1930
7NSP|1|A|U|1931
7NSP|1|A|A|1932
7NSP|1|A|G|1933
*
7NSP|1|A|C|1967
7NSP|1|A|G|1968
7NSP|1|A|A|1969
7NSP|1|A|A|1970
7NSP|1|A|U|1971
7NSP|1|A|G|1972

Current chains

Chain A
23S rRNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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