J4_7NSQ_005

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7NSQ|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSQ_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0672

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NSQ|1|A|G|1310
7NSQ|1|A|G|1311
7NSQ|1|A|U|1312
7NSQ|1|A|U|1313
7NSQ|1|A|C|1314
*
7NSQ|1|A|G|1338
7NSQ|1|A|G|1339
7NSQ|1|A|U|1340
7NSQ|1|A|G|1341
7NSQ|1|A|A|1342
7NSQ|1|A|G|1343
*
7NSQ|1|A|C|1404
7NSQ|1|A|U|1405
*
7NSQ|1|A|A|1597
7NSQ|1|A|A|1598
7NSQ|1|A|U|1599
7NSQ|1|A|C|1600
7NSQ|1|A|G|1601
7NSQ|1|A|U|1602
7NSQ|1|A|A|1603
7NSQ|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23