J4_7NWH_005

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7NWH|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWH|1|5|G|2618
7NWH|1|5|G|2619
*
7NWH|1|5|U|2637
7NWH|1|5|G|2638
7NWH|1|5|U|2639
7NWH|1|5|G|2640
7NWH|1|5|A|2641
7NWH|1|5|A|2642
*
7NWH|1|5|U|2692
7NWH|1|5|G|2693
7NWH|1|5|G|2694
7NWH|1|5|A|2695
7NWH|1|5|A|2696
7NWH|1|5|A|2697
7NWH|1|5|G|2698
*
7NWH|1|5|U|2718
7NWH|1|5|C|2719

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

L22

Chain g

60S ribosomal protein L34

Chain k

L38