J4_7NWI_008

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7NWI|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWI|1|5|G|2618
7NWI|1|5|G|2619
*
7NWI|1|5|U|2637
7NWI|1|5|G|2638
7NWI|1|5|U|2639
7NWI|1|5|G|2640
7NWI|1|5|A|2641
7NWI|1|5|A|2642
*
7NWI|1|5|U|2692
7NWI|1|5|G|2693
7NWI|1|5|G|2694
7NWI|1|5|A|2695
7NWI|1|5|A|2696
7NWI|1|5|A|2697
7NWI|1|5|G|2698
*
7NWI|1|5|U|2718
7NWI|1|5|C|2719

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22

Chain g

60S ribosomal protein L34

Chain k

L38